PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2773s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 215aa    MW: 24077.1 Da    PI: 6.8172
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2773s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.1e-102783561
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
                         kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l +
  Araha.2773s0002.1.p 27 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLAN 83
                         9*****************************************999988776666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-152387IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7372588IPR004827Basic-leucine zipper domain
PfamPF001701.0E-82782IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-102778No hitNo description
Gene3DG3DSA:1.20.5.1706.5E-82772No hitNo description
CDDcd147034.11E-202877No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MYAGEIMDAK KAMPPEKLSE LWNIDPKRAK RILANRQSAA RSKERKARYI QELERKVQSL  60
QTEATTLSAQ LTLYQRDTNG LANENTDLKL RLQAMEQQAQ LRNALNEALR KEVERMKMET  120
GEISGNSDSF DMGMQQIQYS SSTFMAIPPY HGSMNVHDMQ MHSSFNPMEM SNPQSVSEFL  180
QNGRLQGLEI SSNSSSLVKS EGPSLSASES SSAY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198520.0AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAY0624740.0AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBankBT0001020.0BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889621.11e-151predicted protein
SwissprotQ6S4P48e-72RF2B_ORYSJ; Transcription factor RF2b
TrEMBLD7KG721e-151D7KG72_ARALL; Predicted protein
STRINGAl_scaffold_0001_6231e-151(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-138basic leucine-zipper 52